2021 Publications
Bhattarai, G., Fennell, A., Londo, J. P., Coleman, C., & Kovacs, L. G. (2021). A novel grape downy mildew resistance locus from Vitis rupestris. American Journal of Enology and Viticulture, 72(1), 12-20.
Swift, J. F., Hall, M. E., Harris, Z. N., Kwasniewski, M. T., & Miller, A. J. (2021). Grapevine microbiota reflect diversity among compartments and complex interactions within and among root and shoot systems. Microorganisms, 9(1), 92.
2020 Publications
Bryson, A. E., M. Wilson Brown, J. Mullins, W. Dong, K. Bahmani, N. Bornowski, C. Chiu, ... & Chitwood, D. H. (2020). Composite modeling of leaf shape along shoots discriminates Vitis species better than individual leaves. Applications in Plant Sciences 8(12): e11404.
Chitwood, D. H. (2020). The shapes of wine and table grape leaves: an ampelometric study inspired by the methods of Pierre Galet. Plants, People, Planet.
Chitwood, D. H., Mullins, J., Migicovsky, Z., Frank, M., VanBuren, R., & Londo, J. P. (2020). Vein-to-blade ratio is an allometric indicator of climate-induced changes in grapevine leaf size and shape. bioRxiv.
Maimaitiyiming, M., Maimaitijiang, M., Sidike, P., Sagan, V., Migicovsky, Z., Chitwood, D. H., ... & Kwasniewski, M. Modeling Early Indicators of Grapevine Physiology Using Hyperspectral Imaging and Partial Least Squares Regression (PLSR). In IGARSS 2020-2020 IEEE International Geoscience and Remote Sensing Symposium (pp. 1117-1120). IEEE.
Maimaitiyiming, M., Sagan, V., Sidike, P., Maimaitijiang, M., Miller, A. J., & Kwasniewski, M. (2020). Leveraging very-high spatial resolution hyperspectral and thermal UAV imageries for characterizing diurnal indicators of grapevine physiology. Remote Sensing, 12(19), 3216.
Patel, S., Robben, M., Fennell, A., Londo, J. P., Alahakoon, D., Villegas-Diaz, R., & Swaminathan, P. (2020). Draft genome of the Native American cold hardy grapevine Vitis riparia Michx.‘Manitoba 37’. Horticulture research, 7(1), 1-13.
Williams, B. R., Edwards, C. E., Kwasniewski, M. T., & Miller, A. J. (2020). Epigenomic patterns reflect irrigation and grafting in the grapevine clone 'Chambourcin'. bioRxiv.
2019 Publications
Migicovsky, Z., Harris, Z.N., Klein, L.L., Li, M., McDermaid, A., Chitwood, D.H., Fennell, A., Kovacs, L.G., Kwasniewski, M., Londo, J.P., Ma, Q., and A.J. Miller. (2019). Rootstock effects on scion phenotypes in a ‘Chambourcin’ experimental vineyard. Horticulture Research, 6:64. https://doi.org/10.1038/s41438-019-0146-2
Monier, B., McDermaid, A., Wang, C., Zhao, J., Miller, A., Fennell, A., & Ma, Q. (2019). IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis. PLoS computational biology, 15(2), e1006792.
2018 Publications
Xie, J., Ma, A., Fennell, A., Ma, Q., & Zhao, J. (2018). It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data. Briefings in bioinformatics, 1: 16.
Klein, Laura L., Allison J. Miller, Claudia Ciotir, Katie Hyma, Simon Uribe‐Convers, and Jason Londo. (2018). "High‐throughput sequencing data clarify evolutionary relationships among North American Vitis species and improve identification in USDA Vitis germplasm collections." American journal of botany, 105(2): 215-226.
2017 Publications
Yu Zhang, Juan Xie, Jinyu Yang, Anne Fennell and Qin Ma, QUBIC: a Bioconductor package for qualitative biclustering analysis of gene co-expression data. Bioinformatics. (2017) 33 (3): 450-452. (IF=7.307)
Jinyu Yang, Xin Chen, Adam McDermaid, and Qin Ma, DMINDA 2.0: integrated and systematic views of regulatory DNA motif identification and analyses. Bioinformatics. 2017, Apr 13. doi: 10.1093/bioinformatics/btx223. (IF=7.307).
2018 Presentations
Klein, L.L., Miller, A.J., Ciotir, C., Uribe-Convers, S., and Londo, J.P. 2018. High-throughout sequencing data clarify evolutionary relationships among North American Vitis species and improve identification in USDA Vitis germplasm collections. Plant and Animal Genome XXVI, San Diego, CA, USA. January 13-17.
Miller, A.J., et. al. 2018. The lesser known half of the perennial crop equation: diversity, diversification, and rootstock domestication in grafted grapevines. Genomics and Systems Biology VIII. NYU Abu Dhabi Center for Genomics and Systems Biology, Abu Dhabi, United Arab Emirates. February 8.
Migicovsky, Z., Chitwood, D.H., Fennell, A., Harris, Z., Klein, L.L., Kovacs, L., Kwasniewski, M., Li, M., Londo, J.P., Ma, Q., Mcdermaid, A., and Miller, A.J. 2018. Rootstock effects on shoot system phenotypes in a ‘Chambourcin’ experimental vineyard. Phenome 2018, Tucson, AZ, USA. February 14-18.
Migicovsky, Z., McDermaid, A., Fennell, A., Klein, L., Kovacs, L., Kwasniewski, M., Harris, Z., and Miller, A. Rootstock influences of shoot system phenotypes: leaf shape, ion concentration and gene expression in the Mount Vernon ‘Chambourcin’ vineyard. Show Me Grape and Wine Conference and Symposium, Columbia, MO. March 9.
2017 Presentations
Miller, A., Chitwood D., Fennell, A., Kovacs L., Kwasniewski M., Londo, J. (2017). International Plant & Animal Genome meeting. San Diego, California, US. January.
Miller, A., Chitwood D., Fennell, A., Kovacs L., Kwasniewski M., Londo, J. (2017). University of Minnesota Plant Breeding Symposium, part of DuPont Plant Sciences Symposia series. Saint Paul, Minnesota, US.
Miller, A., Chitwood D., Fennell, A., Kovacs L., Kwasniewski M., Londo, J. (2017). University of Missouri College of Natural Resources Research Day. Columbia, Missouri, US.
Miller, A., Chitwood D., Fennell, A., Kovacs L., Kwasniewski M., Londo, J. (2017). Middle Tennessee State University departmental seminar series. Murfreesboro, Tennessee, US.
Miller, A., Chitwood D., Fennell, A., Kovacs L., Kwasniewski M., Londo, J. (2017). Danforth Plant Sciences Center Annual Retreat. Saint Louis, Missouri, US. May 26.
Williams, B., and Miller, A. (2017). Missouri Grape and Wine Institute Research Committee, Columbia, Missouri, US. June.
Miller, A., Chitwood, D., Klein, L. Kwasniewski, M., Kovacs, L., Li M., Londo, J. (2017). Grapevine rootstock species (Vitis spp.): diversity, comparative transcriptomics, and impacts on shoot system phenotypes in grafted plants. XIX International Botanical Congress. Shenzhen, Guangdong, China. July 26.
Migicovsky, Z., Chitwood, D.H., Cousins, P., Fennell, A., Klein, L., Kovacs, L. Kwasniewski, M., Li, M., Londo, J., and Miller, A.J. (2017). From the bottom up: rootstock effects on grapevines in Mount Vernon, Missouri. International Conference on Grape Phylloxera and Nematodes. Davis, California, US. August 23.
Miller, A., Chitwood D., Fennell, A., Kovacs L., Kwasniewski M., Londo, J. (2017). Adapting perennial crops for climate change: graft transmissible effects of rootstocks on grapevine shoots. North American Grape Breeders Meeting. Davis, California, US. August 26.
2016 Presentations
Cousins, P. (2016). Internships opportunities at E. & J. Gallo Winery. Saint Louis University, Saint Louis, Missouri, US. November 30.
Cousins, P. (2016). Internships opportunities at E. & J. Gallo Winery. Missouri State University, Springfield, Missouri, US.
Klein, L.L., Miller, A.J., Ciotir, C., Uribe-Convers, S., and Londo, J.P. 2018. High-throughout sequencing data clarify evolutionary relationships among North American Vitis species and improve identification in USDA Vitis germplasm collections. Plant and Animal Genome XXVI, San Diego, CA, USA. January 13-17.
Miller, A.J., et. al. 2018. The lesser known half of the perennial crop equation: diversity, diversification, and rootstock domestication in grafted grapevines. Genomics and Systems Biology VIII. NYU Abu Dhabi Center for Genomics and Systems Biology, Abu Dhabi, United Arab Emirates. February 8.
Migicovsky, Z., Chitwood, D.H., Fennell, A., Harris, Z., Klein, L.L., Kovacs, L., Kwasniewski, M., Li, M., Londo, J.P., Ma, Q., Mcdermaid, A., and Miller, A.J. 2018. Rootstock effects on shoot system phenotypes in a ‘Chambourcin’ experimental vineyard. Phenome 2018, Tucson, AZ, USA. February 14-18.
Migicovsky, Z., McDermaid, A., Fennell, A., Klein, L., Kovacs, L., Kwasniewski, M., Harris, Z., and Miller, A. Rootstock influences of shoot system phenotypes: leaf shape, ion concentration and gene expression in the Mount Vernon ‘Chambourcin’ vineyard. Show Me Grape and Wine Conference and Symposium, Columbia, MO. March 9.
2017 Presentations
Miller, A., Chitwood D., Fennell, A., Kovacs L., Kwasniewski M., Londo, J. (2017). International Plant & Animal Genome meeting. San Diego, California, US. January.
Miller, A., Chitwood D., Fennell, A., Kovacs L., Kwasniewski M., Londo, J. (2017). University of Minnesota Plant Breeding Symposium, part of DuPont Plant Sciences Symposia series. Saint Paul, Minnesota, US.
Miller, A., Chitwood D., Fennell, A., Kovacs L., Kwasniewski M., Londo, J. (2017). University of Missouri College of Natural Resources Research Day. Columbia, Missouri, US.
Miller, A., Chitwood D., Fennell, A., Kovacs L., Kwasniewski M., Londo, J. (2017). Middle Tennessee State University departmental seminar series. Murfreesboro, Tennessee, US.
Miller, A., Chitwood D., Fennell, A., Kovacs L., Kwasniewski M., Londo, J. (2017). Danforth Plant Sciences Center Annual Retreat. Saint Louis, Missouri, US. May 26.
Williams, B., and Miller, A. (2017). Missouri Grape and Wine Institute Research Committee, Columbia, Missouri, US. June.
Miller, A., Chitwood, D., Klein, L. Kwasniewski, M., Kovacs, L., Li M., Londo, J. (2017). Grapevine rootstock species (Vitis spp.): diversity, comparative transcriptomics, and impacts on shoot system phenotypes in grafted plants. XIX International Botanical Congress. Shenzhen, Guangdong, China. July 26.
Migicovsky, Z., Chitwood, D.H., Cousins, P., Fennell, A., Klein, L., Kovacs, L. Kwasniewski, M., Li, M., Londo, J., and Miller, A.J. (2017). From the bottom up: rootstock effects on grapevines in Mount Vernon, Missouri. International Conference on Grape Phylloxera and Nematodes. Davis, California, US. August 23.
Miller, A., Chitwood D., Fennell, A., Kovacs L., Kwasniewski M., Londo, J. (2017). Adapting perennial crops for climate change: graft transmissible effects of rootstocks on grapevine shoots. North American Grape Breeders Meeting. Davis, California, US. August 26.
2016 Presentations
Cousins, P. (2016). Internships opportunities at E. & J. Gallo Winery. Saint Louis University, Saint Louis, Missouri, US. November 30.
Cousins, P. (2016). Internships opportunities at E. & J. Gallo Winery. Missouri State University, Springfield, Missouri, US.
